Index

A

align_seqs() (in module pyrepseq.plotting)

C

calculate_neighbor_numbers() (in module pyrepseq.distance) cdist() (in module pyrepseq.distance)

chao1() (in module pyrepseq.stats) chao2() (in module pyrepseq.stats)

D

downsample() (in module pyrepseq.distance)

F

find_neighbor_pairs() (in module pyrepseq.distance)

find_neighbor_pairs_index() (in module pyrepseq.distance)

H

hamming_neighbors() (in module pyrepseq.distance)

hash_based() (in module pyrepseq.nn) hierarchical_clustering() (in module pyrepseq.distance)

I

isdist1() (in module pyrepseq.distance)

isvalidaa() (in module pyrepseq.io) isvalidcdr3() (in module pyrepseq.io)

J

jaccard_index() (in module pyrepseq.stats)

K

kdtree() (in module pyrepseq.nn)

L

label_axes() (in module pyrepseq.plotting) labels_to_colors_hls() (in module pyrepseq.plotting)

labels_to_colors_tableau() (in module pyrepseq.plotting) levenshtein_neighbors() (in module pyrepseq.distance) load_pcDelta_background() (in module pyrepseq.distance)

M

module pyrepseq pyrepseq.distance pyrepseq.io pyrepseq.nn pyrepseq.plotting pyrepseq.stats

multimerge() (in module pyrepseq.io)

N

nearest_neighbor() (in module pyrepseq.nn) nearest_neighbor_tcrdist() (in module pyrepseq.nn)

next_nearest_neighbors() (in module pyrepseq.distance) nndist_hamming() (in module pyrepseq.distance)

O

overlap() (in module pyrepseq.stats)

overlap_coefficient() (in module pyrepseq.stats)

P

pc() (in module pyrepseq.stats) pc_conditional() (in module pyrepseq.stats) pc_joint() (in module pyrepseq.stats) pc_n() (in module pyrepseq.stats) pcDelta() (in module pyrepseq.distance) pcDelta_grouped() (in module pyrepseq.distance) pcDelta_grouped_cross() (in module pyrepseq.distance) pdist() (in module pyrepseq.distance) powerlaw_mle_alpha() (in module pyrepseq.stats) powerlaw_sample() (in module pyrepseq.stats) pyrepseq module

pyrepseq.distance module pyrepseq.io module pyrepseq.nn module pyrepseq.plotting module pyrepseq.stats module

R

rankfrequency() (in module pyrepseq.plotting)

renyi2_entropy() (in module pyrepseq.stats)

S

seqlogos() (in module pyrepseq.plotting) seqlogos_vj() (in module pyrepseq.plotting) shannon_entropy() (in module pyrepseq.stats) similarity_clustermap() (in module pyrepseq.plotting)

standardize_dataframe() (in module pyrepseq.io) stdpc() (in module pyrepseq.stats) stdpc_n() (in module pyrepseq.stats) subsample() (in module pyrepseq.stats) symspell() (in module pyrepseq.nn)

V

var_chao1() (in module pyrepseq.stats)

var_chao2() (in module pyrepseq.stats) varpc_n() (in module pyrepseq.stats)